Chin. Phys. Lett.  2007, Vol. 24 Issue (3): 644-647    DOI:
Original Articles |
Effects of Substrate Hydrophobicity/Hydrophilicity on Height Measurement of Individual DNA Molecules
WANG Hua-Bin 1,5;ZHOU Xing-Fei 2;AN Hong-Jie 3, GUO Yun-Chang 1;SUN
Jie-Lin 4;ZHANG Yi 1; HU Jun 1,4
1Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 2018002Department of Physics, Ningbo University, Ningbo 3152113Tianjin University of Science and Technology, Tianjin 3000404Bio-X Life Science Research Center, Shanghai Jiao TongUniversity, Shanghai 2000305Graduate School of the Chinese Academy of Sciences, Beijing 100080
Cite this article:   
WANG Hua-Bin, ZHOU Xing-Fei, AN Hong-Jie et al  2007 Chin. Phys. Lett. 24 644-647
Download: PDF(465KB)  
Export: BibTeX | EndNote | Reference Manager | ProCite | RefWorks
Abstract Effects of substrate hydrophobicity/hydrophilicity on height measurement
of individual ds-DNA molecules are investigated with tapping mode atomic
force microscopy (TMAFM) and vibrating mode scanning polarization force
microscopy (VSPFM). The measured heights of ds-DNA on hydrophobic highly
oriented pyrolytic graphite (HOPG) are remarkably less than those on
hydrophilic bare mica and Ni 2+ treated mica in both TMAFM and VSPFM. By analysing the results, we propose that the hydrophobicity/hydrophilicity of substrate can greatly influence the height measurement of DNA molecules.
Keywords: 06.60.Ei      07.79.Lh     
Received: 30 October 2006      Published: 08 February 2007
PACS:  06.60.Ei (Sample preparation)  
  07.79.Lh (Atomic force microscopes)  
TRENDMD:   
URL:  
https://cpl.iphy.ac.cn/       OR      https://cpl.iphy.ac.cn/Y2007/V24/I3/0644
Service
E-mail this article
E-mail Alert
RSS
Articles by authors
WANG Hua-Bin
ZHOU Xing-Fei
AN Hong-Jie
GUO Yun-Chang
SUNJie-Lin
ZHANG Yi
HU Jun
[1] Konig P and Richmond T J 1993 J. Mol. Biol. 233 139
[2] Morikis D and Lambris J D 2004 Trends. Immunol. 25 700
[3] Wilchek M et al 2006 Immunol. Lett. 103 27
[4] Binnig G et al 1986 Phys. Rev. Lett. 56 930
[5] Wei Z and Zhao Y P 2004 Chin. Phys. Lett. 21 616
[6] Hu J et al 1996 Langmuir 12 1697
[7] Gaczynska M et al 2004 Proc. Natl. Acad. Sci. U.S.A. 101 17952
[8] Alessandrini A and Facci P 2005 Meas. Sci. Technol. 16 R65
[9] Muller D J et al 1997 J. Struct. Biol. 119 172
[10] Kowalewski T and Holtzman DM 1999 Proc. Natl. Acad.Sci. U.S.A. 96 3688
[11] Zhang F et al 2006 Angew. Chem. Int. Ed. 45 3611
[12] Brown C L et al 2002 J. Am. Chem. Soc. 124 6846
[13] Sherratt M J et al 2004 Biophys. J. 86 3211
[14] Li X J et al 2003 J. Vac. Sci. Technol. B 21 1070
[15] Watson J D and Crick F H 1953 Nature 171 737
[16] Lyubchenko Y L et al 1993 Nucleic Acids Res. 21 1117
[17] Bustamante C et al 1997 Curr. Opin. Struct. Biol. 7 709
[18] Shaiu W L et al 1993 Nucleic Acids Res. 21 99
[19] Hu J et al 1995 Science 268 267
[20] Hu J et al 1995 Appl. Phys. Lett. 67 476
[21] Zhou X F et al 2005 Phys. Rev. E 71 062901
[22] Zhou X F et al 2005 Chem. Lett. 134 1488
[23] Zhang L J and Wang H B 2006 Chin. Phys. Lett. 23 2315
[24] Moreno-Herrero F et al 2003 Ultramicroscopy 96 167
[25] Pastre D et al 2003 Biophys. J. 85 2507
[26] Jiang X H and Lin X Q 2004 Electrochem. Commun. 6 873
[27] Vaddiraju S et al 2005 Nano. Lett. 5 1625
Related articles from Frontiers Journals
[1] ZHAO Kun-Yu,ZENG Hua-Rong**,SONG Hong-Zhang,HUI Sen-Xing,LI Guo-Rong,YIN Qing-Rui. The Observation of Martensite and Magnetic Domain Structures in Ni53Mn24Ga23 Shape Memory Alloys by Scanning Electron Acoustic Microscopy and Scanning Thermal Microscopy[J]. Chin. Phys. Lett., 2012, 29(5): 644-647
[2] BAI Yong-Qiang**, ZHU Xing, WU Jun-Zheng, BAI Wen-Guang . Micropore Structure Representation of Sandstone in Petroleum Reservoirs Using an Atomic Force Microscope[J]. Chin. Phys. Lett., 2011, 28(8): 644-647
[3] LIU Li-Ming, ZENG Hua-Rong**, CAO Zhen-Zhu, LENG Xue, ZHAO Kun-Yu, LI Guo-Rong, YIN Qing-Rui . Piezoresponse Force Microscopy Imaging of Ferroelectric Domains in Bi(Zn1/2Ti1/2)O3−Pb(Mg1/3Nb2/3)O3−PbTiO3 Piezoelectric Ceramics[J]. Chin. Phys. Lett., 2011, 28(8): 644-647
[4] ZHAO Ya-Jun, CHENG Qian, QIAN Meng-Lu. Frequency Response of the Sample Vibration Mode in Scanning Probe Acoustic Microscope[J]. Chin. Phys. Lett., 2010, 27(5): 644-647
[5] LI Yuan, QIAN Jian-Qiang. Higher Harmonics Generation in Tapping Mode Atomic Force Microscope[J]. Chin. Phys. Lett., 2009, 26(10): 644-647
[6] ZHAO Kun-Yu, ZENG Hua-Rong, LI Guo-Rong, SONG Hong-Zhang, CHENG Li-Hong, HUI Sen-Xing, YIN Qing-Rui. Nanoscale Thermal Response in ZnO Varistors by Atomic Force Microscopy[J]. Chin. Phys. Lett., 2009, 26(10): 644-647
[7] ZHAO Kun-Yu, ZENG Hua-Rong, SONG Hong-Zhang, HUI Sen-Xing, LI Guo-Rongv, YIN Qing-Rui, Kiyoshi Shimamura, Chinna Venkadasamy Kannan, Encarnacion Antonia Garcia Villora, Shunji Takekawa, Kenji Kitamura. Acoustic Imaging Frequency Dynamics of Ferroelectric Domains by Atomic Force Microscopy[J]. Chin. Phys. Lett., 2008, 25(9): 644-647
[8] WANG Peng, YANG Hai-Jun, WANG Hua-Bin, LI Hai, WANG Xin-Yan, WANG Ying, LÜ, Jun-Hong, LI Bin, ZHANG Yi, HU Jun,. Modification of AFM Tips for Facilitating Picking-up of Nanoparticles[J]. Chin. Phys. Lett., 2008, 25(7): 644-647
[9] DING Xi-Dong, FU Gang, XIONG Xiao-Min, ZHANG Jin-Xiu. Characterization Method of Polycrystalline Materials Using Conductive Atomic Force Microscopy[J]. Chin. Phys. Lett., 2008, 25(10): 644-647
[10] CHEN Yu-Hang, HUANG Wen-Hao. Resonant Response of Rectangular AFM Cantilever in Liquid[J]. Chin. Phys. Lett., 2007, 24(2): 644-647
[11] MA Hong-Xia, HAN Yan-Jun, SHENTU Wei-Jin, ZHANG Xian-Peng, LUO Yi,. A Novel Ni/Ag/Pt Ohmic Contact to P-Type GaN for Flip-Chip Light-Emitting Diodes[J]. Chin. Phys. Lett., 2006, 23(8): 644-647
[12] WANG Zhao-Kui, LIN Kui-Xun, LIN Xuan-Ying, QIU Gui-Ming, ZHU Zu-Song. A Movable Mass Spectroscopy Sampling Apparatus for Measuring Spatial Distribution of Neutral Radicals in Silane Plasma[J]. Chin. Phys. Lett., 2005, 22(4): 644-647
[13] WEI Zheng, ZHAO Ya-Pu. Experimental Investigation of the Velocity Effect on Adhesion Forces with an Atomic Force Microscope[J]. Chin. Phys. Lett., 2004, 21(4): 644-647
[14] BA Long, SHU Jian, SUN Ping, LU Zu-Hong. Mapping Nanoscale Domains in a Sol-Gel-Derived (Pb,La) (Zr, Ti)O3 Thin Film Using Atomic Force Microscopy [J]. Chin. Phys. Lett., 2003, 20(4): 644-647
[15] GONG Zheng, FANG Zhi-Dan, MIAO Zhen-Hua, NIU Zhi-Chuan, FENG Song-Lin. Self-Organized InAs Quantum Wires on GaAs (331)A Substrates[J]. Chin. Phys. Lett., 2003, 20(10): 644-647
Viewed
Full text


Abstract