Chin. Phys. Lett.  2002, Vol. 19 Issue (9): 1382-1384    DOI:
Original Articles |
Influence of Monomer Types on Designability of a Protein-Model Chain
LIANG Hao-Jun;WANG Yuan-Yuan
The Open Laboratory for Bond-Selective Chemistry, Department of Polymer Science and Engineering, University of Science and Technology of China, Hefei 230026
Cite this article:   
LIANG Hao-Jun, WANG Yuan-Yuan 2002 Chin. Phys. Lett. 19 1382-1384
Download: PDF(186KB)  
Export: BibTeX | EndNote | Reference Manager | ProCite | RefWorks
Abstract In a three-dimensional off-lattice model, the method of Shakhnovich and Gutin for minimizing the Hamiltonian is applied to the design of a protein-model chain. The effect of the number of hydrophobic and hydrophilic monomer types on the designability of a protein-model chain is investigated. The simulation results reveal that the number of hydrophobic monomer types is a much more important factor than that of the polar monomer types in the design of a protein-model chain.
Keywords: 87.15.He      87.15.Cc      87.15.Aa     
Published: 01 September 2002
PACS:  87.15.He  
  87.15.Cc (Folding: thermodynamics, statistical mechanics, models, and pathways)  
  87.15.Aa  
TRENDMD:   
URL:  
https://cpl.iphy.ac.cn/       OR      https://cpl.iphy.ac.cn/Y2002/V19/I9/01382
Service
E-mail this article
E-mail Alert
RSS
Articles by authors
LIANG Hao-Jun
WANG Yuan-Yuan
Related articles from Frontiers Journals
[1] XU Wei-Xin, LI Yang, ZHANG John Z. H.. Calculation of Collective Variable-based PMF by Combining WHAM with Umbrella Sampling[J]. Chin. Phys. Lett., 2012, 29(6): 1382-1384
[2] SUN Li, WANG Jun, WANG Wei. Dissection of the Zipping-and-Assembly Mechanism for Folding of Model Proteins[J]. Chin. Phys. Lett., 2010, 27(3): 1382-1384
[3] WANG Shen, LU Hang-Jun, TU Yu-Song, WANG Chun-Lei, FANG Hai-Ping,. Gating of Water Flow Induced by Bending of a Carbon Nanotube[J]. Chin. Phys. Lett., 2009, 26(6): 1382-1384
[4] Waqar Ahmad. Co-Adsorption of CO in NO-CO Reaction on a Metal Catalytic Surface Studied by Computer Simulation[J]. Chin. Phys. Lett., 2009, 26(3): 1382-1384
[5] XU Feng-Dan, LIU Zeng-Rong, ZHANG Zhi-Yong, SHEN Jian-Wei,. Robust and Adaptive MicroRNA-Mediated Incoherent Feedforward Motifs[J]. Chin. Phys. Lett., 2009, 26(2): 1382-1384
[6] M. Khalid, A. U. Qaisrani, M. G. Ullah. Transient Non-Thermal Mobility of CO for CO--NO Catalytic Reaction on Square Lattice: Monte Carlo Simulation[J]. Chin. Phys. Lett., 2008, 25(4): 1382-1384
[7] LU Hang-Jun, , GONG Xiao-Jing, WANG Chun-Lei, FANG Hai-Ping, WAN Rong-Zheng,. Effect of Vibration on Water Transport through Carbon Nanotubes[J]. Chin. Phys. Lett., 2008, 25(3): 1382-1384
[8] Waqar Ahmad. NO--CO--O2 Reaction on a Metal Catalytic Surface using Eley--Rideal Mechanism[J]. Chin. Phys. Lett., 2008, 25(10): 1382-1384
[9] LI Jing-Yuan, YANG Zai-Xing, FANG Hai-Ping, ZHOU Ru-Hong, TANGXiao-Wei. Effect of the Carbon-Nanotube Length on Water Permeability[J]. Chin. Phys. Lett., 2007, 24(9): 1382-1384
[10] ZUO Guang-Hong, HU Jun, FANG Hai-Ping,. Protein Folding under Mediation of Ordering Water: an Off-Lattice Go--Like Model Study[J]. Chin. Phys. Lett., 2007, 24(8): 1382-1384
[11] CHEN Hua, QU Yuan-Gang, PENG Wei-Xian, KUANG Ting-Yun, LI Liang-Bi, WANG Li. Investigation of Chlorophyll Protein 43 and 47 Denaturation by Terahertz Time-Domain Spectroscopy[J]. Chin. Phys. Lett., 2007, 24(7): 1382-1384
[12] WU Heng-An, LONG Rong, WANG Xiu-Xi, WANG Feng-Chao. Elastic Interaction between a String of Cells and an Individual Cell[J]. Chin. Phys. Lett., 2007, 24(5): 1382-1384
[13] CHENG Wei, ZHANG Feng-Shou, ZHOU Hong-Yu. Molecular Dynamics Simulation of Myoglobin Collision with Low Energy Ions[J]. Chin. Phys. Lett., 2007, 24(3): 1382-1384
[14] WU Heng-An, WANG Xiu-Xi, YAN Shun-Ping. Active Control of Cellular Orientation through In-Situ Stress in the Substrate[J]. Chin. Phys. Lett., 2007, 24(12): 1382-1384
[15] WANG Xiao-Feng, LEI Xiao-Ling, FANG Hai-Ping. What Governs the Unzipping Process of Double-Stranded DNA[J]. Chin. Phys. Lett., 2006, 23(5): 1382-1384
Viewed
Full text


Abstract